If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ), 'gf_id' => 'HOM05D000636', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000636' ), 'data_identifier' => 'HOM05D000636', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000636', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '893', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05910' => 'bna', 'A02p01000' => 'bna', 'A02p39730' => 'bna', 'A03p06470' => 'bna', 'A04p31780' => 'bna', 'A05p02540' => 'bna', 'A05p02550' => 'bna', 'A05p11170' => 'bna', 'A05p40270' => 'bna', 'A06p36160' => 'bna', 'A07p26590' => 'bna', 'A07p45360' => 'bna', 'A09p06160' => 'bna', 'A09p36540' => 'bna', 'A10p26330' => 'bna', 'Aa31LG10G6880' => 'aar', 'Aa31LG11G14950' => 'aar', 'Aa31LG1G23810' => 'aar', 'Aa31LG1G23820' => 'aar', 'Aa31LG2G17460' => 'aar', 'Aa31LG3G15800' => 'aar', 'Aa31LG4G530' => 'aar', 'Aa31LG5G18580' => 'aar', 'Aa31LG6G5690' => 'aar', 'Actinidia09654' => 'ach', 'Actinidia13259' => 'ach', 'Actinidia16002' => 'ach', 'Actinidia19522' => 'ach', 'Actinidia20706' => 'ach', 'Actinidia21544' => 'ach', 'Actinidia38548' => 'ach', 'Ah.04g151750' => 'amhyb', 'Ah.08g216110' => 'amhyb', 'Ah.09g232630' => 'amhyb', 'Ah.10g026080' => 'amhyb', 'Ah.10g038750' => 'amhyb', 'Ah.13g076440' => 'amhyb', 'AL1G43870' => 'aly', 'AL2G41270' => 'aly', 'AL3G19420' => 'aly', 'AL4G30480' => 'aly', 'AL4G40120' => 'aly', 'AL4G40130' => 'aly', 'AL6G22080' => 'aly', 'AL6G24830' => 'aly', 'AL6G37250' => 'aly', 'AL7G19370' => 'aly', 'Aqoxy2G00003' => 'aox', 'Aqoxy2G00004' => 'aox', 'Aqoxy2G00203' => 'aox', 'Aqoxy4G00019' => 'aox', 'Aqoxy7G02035' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07RNNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1831QW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54SJKS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F8CQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QZ462' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B5956N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP3F30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I25TD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N4HPZJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QW9XP1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8L9DA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RB6D27' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5BE01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FLCS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YZ918W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8Y3VF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZSL5GJ' => 'arhy', 'AT1G29980' => 'ath', 'AT1G80240' => 'ath', 'AT2G34510' => 'ath', 'AT2G41800' => 'ath', 'AT2G41810' => 'ath', 'AT3G08030' => 'ath', 'AT4G32460' => 'ath', 'AT5G11420' => 'ath', 'AT5G14150' => 'ath', 'AT5G25460' => 'ath', 'ATR0044G006' => 'atr', 'ATR0044G016' => 'atr', 'ATR0044G028' => 'atr', 'ATR0044G033' => 'atr', 'ATR0561G174' => 'atr', 'ATR0606G002' => 'atr', 'ATR0815G058' => 'atr', 'Atru.chr1.1081' => 'acertr', 'Atru.chr1.3145' => 'acertr', 'Atru.chr10.1249' => 'acertr', 'Atru.chr11.2586' => 'acertr', 'Atru.chr6.2565' => 'acertr', 'Atru.chr7.2371' => 'acertr', 'AUR62011577' => 'cqu', 'AUR62016393' => 'cqu', 'AUR62023081' => 'cqu', 'AUR62024440' => 'cqu', 'AUR62024441' => 'cqu', 'AUR62024442' => 'cqu', 'AUR62024443' => 'cqu', 'AUR62024873' => 'cqu', 'AUR62026031' => 'cqu', 'AUR62026032' => 'cqu', 'AUR62026033' => 'cqu', 'AUR62029387' => 'cqu', 'AUR62029388' => 'cqu', 'AUR62029389' => 'cqu', 'AUR62030208' => 'cqu', 'AUR62030675' => 'cqu', 'AUR62039773' => 'cqu', 'BcaB01g05304' => 'bca', 'BcaB01g06340' => 'bca', 'BcaB02g07285' => 'bca', 'BcaB02g08697' => 'bca', 'BcaB02g09536' => 'bca', 'BcaB03g11564' => 'bca', 'BcaB04g21258' => 'bca', 'BcaB06g29202' => 'bca', 'BcaB07g32597' => 'bca', 'BcaB07g32598' => 'bca', 'BcaB07g32599' => 'bca', 'BcaB08g37062' => 'bca', 'BcaC02g07294' => 'bca', 'BcaC02g11513' => 'bca', 'BcaC02g12491' => 'bca', 'BcaC02g12492' => 'bca', 'BcaC03g13366' => 'bca', 'BcaC03g13913' => 'bca', 'BcaC03g17900' => 'bca', 'BcaC04g19229' => 'bca', 'BcaC05g27008' => 'bca', 'BcaC05g27009' => 'bca', 'BcaC05g29587' => 'bca', 'BcaC08g45299' => 'bca', 'BcaC08g47576' => 'bca', 'BcaC09g47973' => 'bca', 'BcaC09g52036' => 'bca', 'BcaC09g52037' => 'bca', 'BcaNung01689' => 'bca', 'BcaNung01926' => 'bca', 'BcaNung02265' => 'bca', 'BcaNung02837' => 'bca', 'BcaNung02838' => 'bca', 'BcaNung03223' => 'bca', 'BolC1t00647H' => 'bol', 'BolC1t05507H' => 'bol', 'BolC2t06458H' => 'bol', 'BolC2t12014H' => 'bol', 'BolC3t13248H' => 'bol', 'BolC4t21942H' => 'bol', 'BolC4t28418H' => 'bol', 'BolC5t31592H' => 'bol', 'BolC5t34590H' => 'bol', 'BolC6t38067H' => 'bol', 'BolC6t40433H' => 'bol', 'BolC7t44764H' => 'bol', 'BolC7t44769H' => 'bol', 'BolC9t59369H' => 'bol', 'BraA01t00558Z' => 'bra', 'BraA01t04347Z' => 'bra', 'BraA02t05081Z' => 'bra', 'BraA02t08938Z' => 'bra', 'BraA03t09978Z' => 'bra', 'BraA05t19247Z' => 'bra', 'BraA05t19248Z' => 'bra', 'BraA06t26538Z' => 'bra', 'BraA07t30302Z' => 'bra', 'BraA07t32040Z' => 'bra', 'BraA09t36260Z' => 'bra', 'BraA09t39175Z' => 'bra', 'BraA10t44690Z' => 'bra', 'C01p06530' => 'bna', 'C02p05030' => 'bna', 'C02p59510' => 'bna', 'C03p07470' => 'bna', 'C04p03010' => 'bna', 'C04p14520' => 'bna', 'C04p69180' => 'bna', 'C05p28740' => 'bna', 'C05p59350' => 'bna', 'C06p29020' => 'bna', 'C06p54200' => 'bna', 'C07p42360' => 'bna', 'C07p42420' => 'bna', 'C09p65440' => 'bna', 'CAN.G1859.3' => 'can', 'CAN.G219.50' => 'can', 'CAN.G395.39' => 'can', 'CAN.G438.82' => 'can', 'CAN.G676.59' => 'can', 'CAN.G676.60' => 'can', 'CAN.G98.19' => 'can', 'CANSAT35G0164' => 'cansat', 'CANSAT56G1586' => 'cansat', 'CANSAT64G1400' => 'cansat', 'CANSAT78G2119' => 'cansat', 'CANSAT80G0315' => 'cansat', 'CANSAT80G1241' => 'cansat', 'CANSAT80G1840' => 'cansat', 'CARHR029410' => 'chi', 'CARHR074250' => 'chi', 'CARHR082770' => 'chi', 'CARHR128600' => 'chi', 'CARHR136880' => 'chi', 'CARHR136890' => 'chi', 'CARHR187950' => 'chi', 'CARHR187970' => 'chi', 'CARHR187990' => 'chi', 'CARHR199180' => 'chi', 'CARHR201810' => 'chi', 'CARHR240370' => 'chi', 'CARHR292360' => 'chi', 'Carub.0001s2823' => 'cru', 'Carub.0002s2730' => 'cru', 'Carub.0003s0761' => 'cru', 'Carub.0004s1618' => 'cru', 'Carub.0004s2407' => 'cru', 'Carub.0004s2408' => 'cru', 'Carub.0006s0987' => 'cru', 'Carub.0006s1236' => 'cru', 'Carub.0006s2331' => 'cru', 'Carub.0007s0812' => 'cru', 'Ca_00548_v3' => 'car', 'Ca_01089_v3' => 'car', 'Ca_12930_v3' => 'car', 'Ca_14476_v3' => 'car', 'Ca_19567_v3' => 'car', 'Ca_31340_v3' => 'car', 'Cc00_g07930' => 'ccan', 'Cc00_g30220' => 'ccan', 'Cc02_g28330' => 'ccan', 'Cc04_g03890' => 'ccan', 'Cc04_g03900' => 'ccan', 'Cc05_g00950' => 'ccan', 'Cc11_g01760' => 'ccan', 'CDE02G3186' => 'cde', 'CDE04G0702' => 'cde', 'CDE04G2665' => 'cde', 'CDE04G3515' => 'cde', 'CDE05G3474' => 'cde', 'CDE07G0602' => 'cde', 'CDE09G0598' => 'cde', 'CDE11G0420' => 'cde', 'Cfa000954' => 'cfa', 'Cfa002021' => 'cfa', 'Cfa010798' => 'cfa', 'Cfa013183' => 'cfa', 'Cfa016823' => 'cfa', 'Ciclev10005198m.g' => 'ccl', 'Ciclev10006613m.g' => 'ccl', 'Ciclev10008711m.g' => 'ccl', 'Ciclev10015527m.g' => 'ccl', 'Ciclev10015578m.g' => 'ccl', 'Ciclev10025880m.g' => 'ccl', 'Ciclev10031881m.g' => 'ccl', 'CiPaw.01G243600' => 'cil', 'CiPaw.03G055200' => 'cil', 'CiPaw.05G110700' => 'cil', 'CiPaw.05G149000' => 'cil', 'CiPaw.05G260500' => 'cil', 'CiPaw.07G220500' => 'cil', 'CiPaw.08G013700' => 'cil', 'CiPaw.09G037800' => 'cil', 'CiPaw.09G124700' => 'cil', 'CiPaw.10G033000' => 'cil', 'CiPaw.10G092500' => 'cil', 'CiPaw.13G007000' => 'cil', 'CiPaw.14G001700' => 'cil', 'CiPaw.15G177900' => 'cil', 'ClCG00G005740' => 'cla', 'ClCG01G024570' => 'cla', 'ClCG04G000080' => 'cla', 'ClCG04G000100' => 'cla', 'ClCG05G013470' => 'cla', 'ClCG08G013100' => 'cla', 'ClCG10G012260' => 'cla', 'COL.COLO4_04873' => 'col', 'COL.COLO4_12875' => 'col', 'COL.COLO4_17206' => 'col', 'COL.COLO4_23985' => 'col', 'COL.COLO4_28249' => 'col', 'COL.COLO4_31082' => 'col', 'Cpa.g.sc10.217' => 'cpa', 'Cpa.g.sc125.29' => 'cpa', 'Cpa.g.sc166.14' => 'cpa', 'Cpa.g.sc171.19' => 'cpa', 'Cpa.g.sc427.3' => 'cpa', 'Cpa.g.sc92.46' => 'cpa', 'CsaV3_2G031830' => 'csa', 'CsaV3_3G027040' => 'csa', 'CsaV3_3G032040' => 'csa', 'CsaV3_4G011710' => 'csa', 'CsaV3_6G051690' => 'csa', 'CSS0003934' => 'camsi', 'CSS0006762' => 'camsi', 'CSS0014511' => 'camsi', 'CSS0023628' => 'camsi', 'CSS0026481' => 'camsi', 'CSS0030421' => 'camsi', 'CSS0033740' => 'camsi', 'CSS0037776' => 'camsi', 'CSS0045978' => 'camsi', 'CSS0047294' => 'camsi', 'DCAR_003051' => 'dca', 'DCAR_003920' => 'dca', 'DCAR_013598' => 'dca', 'DCAR_013599' => 'dca', 'DCAR_020487' => 'dca', 'DCAR_025475' => 'dca', 'DCAR_029686' => 'dca', 'Dinv09328' => 'din', 'Dinv11614' => 'din', 'Dinv12475' => 'din', 'Dinv14834' => 'din', 'Dinv30180' => 'din', 'Dinv30559' => 'din', 'Dinv30735' => 'din', 'Dinv32264' => 'din', 'Dinv38086' => 'din', 'Dinv43418' => 'din', 'Dinv43419' => 'din', 'Duzib106G1227' => 'dzi', 'Duzib160G0678' => 'dzi', 'Duzib168G0226' => 'dzi', 'Duzib187G1190' => 'dzi', 'Duzib187G1638' => 'dzi', 'Duzib192G0009' => 'dzi', 'Duzib192G0976' => 'dzi', 'Duzib235G1007' => 'dzi', 'Duzib235G1335' => 'dzi', 'Duzib268G0550' => 'dzi', 'ECA233G5830' => 'eca', 'ECA234G4112' => 'eca', 'ECA234G4422' => 'eca', 'ECA236G1808' => 'eca', 'ECA236G3217' => 'eca', 'ECA247G1569' => 'eca', 'ECA247G3945' => 'eca', 'ECA248G0404' => 'eca', 'ECA248G1890' => 'eca', 'EL10Ac2g02586' => 'bvu', 'EL10Ac2g04345' => 'bvu', 'EL10Ac3g07081' => 'bvu', 'EL10Ac3g07082' => 'bvu', 'EL10Ac3g07085' => 'bvu', 'EL10Ac3g07086' => 'bvu', 'EL10Ac8g19711' => 'bvu', 'EL10Ac9g21946' => 'bvu', 'Eucgr.A02362' => 'egr', 'Eucgr.C01791' => 'egr', 'Eucgr.C02812' => 'egr', 'Eucgr.E02406' => 'egr', 'Eucgr.F02553' => 'egr', 'Eucgr.G03366' => 'egr', 'Eucgr.H02015' => 'egr', 'Eucgr.I01650' => 'egr', 'FAN01G0573' => 'fan', 'FAN02G1188' => 'fan', 'FAN03G1467' => 'fan', 'FAN05G3001' => 'fan', 'FAN05G4771' => 'fan', 'FAN06G3269' => 'fan', 'FAN09G2210' => 'fan', 'FAN09G4245' => 'fan', 'FAN10G0680' => 'fan', 'FAN11G3484' => 'fan', 'FAN14G5431' => 'fan', 'FAN15G2030' => 'fan', 'FAN16G2192' => 'fan', 'FAN20G1090' => 'fan', 'FAN21G1891' => 'fan', 'FAN24G0056' => 'fan', 'FAN25G3675' => 'fan', 'FAN27G1427' => 'fan', 'FvH4_2g29680' => 'fve', 'FvH4_3g05680' => 'fve', 'FvH4_5g33451' => 'fve', 'FvH4_6g23670' => 'fve', 'FvH4_6g30480' => 'fve', 'FvH4_7g01370' => 'fve', 'Glyma.06G070900' => 'gma', 'Glyma.06G071000' => 'gma', 'Glyma.08G209400' => 'gma', 'Glyma.09G228000' => 'gma', 'Glyma.10G090100' => 'gma', 'Glyma.12G008550' => 'gma', 'Glyma.12G008601' => 'gma', 'Glyma.13G217700' => 'gma', 'Glyma.13G362800' => 'gma', 'Glyma.14G126200' => 'gma', 'Glyma.15G011000' => 'gma', 'Glyma.15G094700' => 'gma', 'Glyma.15G276100' => 'gma', 'Glyma.17G208200' => 'gma', 'Gohir.A02G107800' => 'ghi', 'Gohir.A02G112500' => 'ghi', 'Gohir.A05G148800' => 'ghi', 'Gohir.A06G187300' => 'ghi', 'Gohir.A07G038200' => 'ghi', 'Gohir.A07G228000' => 'ghi', 'Gohir.A07G228050' => 'ghi', 'Gohir.A08G143200' => 'ghi', 'Gohir.A09G122500' => 'ghi', 'Gohir.A10G040200' => 'ghi', 'Gohir.A10G077000' => 'ghi', 'Gohir.A10G077200' => 'ghi', 'Gohir.D03G060613' => 'ghi', 'Gohir.D03G068700' => 'ghi', 'Gohir.D05G151400' => 'ghi', 'Gohir.D06G193500' => 'ghi', 'Gohir.D07G042300' => 'ghi', 'Gohir.D07G235100' => 'ghi', 'Gohir.D07G235200' => 'ghi', 'Gohir.D08G164200' => 'ghi', 'Gohir.D09G118600' => 'ghi', 'Gohir.D10G041100' => 'ghi', 'Gohir.D10G074300' => 'ghi', 'Gohir.D10G074366' => 'ghi', 'Gorai.001G045200' => 'gra', 'Gorai.001G270900' => 'gra', 'Gorai.001G271000' => 'gra', 'Gorai.003G091800' => 'gra', 'Gorai.004G171200' => 'gra', 'Gorai.006G137000' => 'gra', 'Gorai.009G155400' => 'gra', 'Gorai.010G227400' => 'gra', 'Gorai.011G043300' => 'gra', 'Gorai.011G080100' => 'gra', 'Gorai.011G080200' => 'gra', 'Gorai.013G110800' => 'gra', 'GSVIVG01017233001' => 'vvi', 'GSVIVG01021443001' => 'vvi', 'GSVIVG01033098001' => 'vvi', 'GSVIVG01033286001' => 'vvi', 'GSVIVG01035803001' => 'vvi', 'HanXRQChr01g0015811' => 'han', 'HanXRQChr01g0015821' => 'han', 'HanXRQChr04g0118581' => 'han', 'HanXRQChr08g0234461' => 'han', 'HanXRQChr10g0288831' => 'han', 'HanXRQChr10g0288961' => 'han', 'HanXRQChr10g0289441' => 'han', 'HanXRQChr10g0304501' => 'han', 'HanXRQChr10g0314841' => 'han', 'HanXRQChr11g0336641' => 'han', 'HanXRQChr12g0385421' => 'han', 'HanXRQChr13g0402501' => 'han', 'HanXRQChr15g0466711' => 'han', 'HanXRQChr17g0569081' => 'han', 'Haze_03173' => 'cav', 'Haze_05585' => 'cav', 'Haze_16504' => 'cav', 'Haze_19865' => 'cav', 'Haze_21576' => 'cav', 'Hma1.2p1_0000F.1_g000810' => 'hma', 'Hma1.2p1_0286F.1_g114080' => 'hma', 'Hma1.2p1_1057F.1_g252860' => 'hma', 'Hma1.2p1_1168F.1_g263130' => 'hma', 'HPP92_009663' => 'vpl', 'HPP92_009694' => 'vpl', 'HPP92_018756' => 'vpl', 'HPP92_023175' => 'vpl', 'Hund03018' => 'sun', 'Hund06587' => 'sun', 'Hund19151' => 'sun', 'Hund21530' => 'sun', 'Hund25707' => 'sun', 'Lalb_Chr03g0029951' => 'lal', 'Lalb_Chr08g0243911' => 'lal', 'Lalb_Chr14g0373641' => 'lal', 'Lalb_Chr15g0086891' => 'lal', 'Lalb_Chr20g0118011' => 'lal', 'Lalb_Chr22g0351041' => 'lal', 'Lalb_Chr24g0402251' => 'lal', 'Lalb_Chr25g0279531' => 'lal', 'Lalb_Chr25g0282871' => 'lal', 'Lj1g0025882' => 'lja', 'Lj2A306T69' => 'lonja', 'Lj2C384G1' => 'lonja', 'Lj3g0004505' => 'lja', 'Lj3g0013954' => 'lja', 'Lj3g0018546' => 'lja', 'Lj3g0021967' => 'lja', 'Lj5A67T57' => 'lonja', 'Lj5g0023260' => 'lja', 'Lj6C825T12' => 'lonja', 'Lj6C825T13' => 'lonja', 'Lj6g0010836' => 'lja', 'Lj7A574T63' => 'lonja', 'Lj7A717G56' => 'lonja', 'Lj9A503T43' => 'lonja', 'Lju41C52T10' => 'lonja', 'Lsat_1_v5_gn_0_9901' => 'lsa', 'Lsat_1_v5_gn_0_9921' => 'lsa', 'Lsat_1_v5_gn_0_9981' => 'lsa', 'Lsat_1_v5_gn_1_105120' => 'lsa', 'Lsat_1_v5_gn_1_105180' => 'lsa', 'Lsat_1_v5_gn_1_105220' => 'lsa', 'Lsat_1_v5_gn_5_132621' => 'lsa', 'Lsat_1_v5_gn_6_22100' => 'lsa', 'Lsat_1_v5_gn_7_29861' => 'lsa', 'Lsat_1_v5_gn_8_81460' => 'lsa', 'Lsat_1_v5_gn_9_28741' => 'lsa', 'Lsat_1_v5_gn_9_28841' => 'lsa', 'Manes.03G017500' => 'mes', 'Manes.04G118200' => 'mes', 'Manes.07G007600' => 'mes', 'Manes.09G021100' => 'mes', 'Manes.10G139500' => 'mes', 'Manes.11G050870' => 'mes', 'Manes.15G121000' => 'mes', 'Manes.15G160500' => 'mes', 'Manes.16G119100' => 'mes', 'Manes.17G069400' => 'mes', 'MBI01_g42340_MAGBIO' => 'mbi', 'MBI01_g42341_MAGBIO' => 'mbi', 'MBI04_g17675_MAGBIO' => 'mbi', 'MBI04_g29849_MAGBIO' => 'mbi', 'MBI07_g26357_MAGBIO' => 'mbi', 'MBI10_g32112_MAGBIO' => 'mbi', 'MBI11_g07464_MAGBIO' => 'mbi', 'MBI13_g01840_MAGBIO' => 'mbi', 'MD02G1307700' => 'mdo', 'MD05G1284600' => 'mdo', 'MD07G1017900' => 'mdo', 'MD08G1143200' => 'mdo', 'MD09G1222000' => 'mdo', 'MD10G1263000' => 'mdo', 'MD12G1073200' => 'mdo', 'MD14G1071300' => 'mdo', 'MD15G1120000' => 'mdo', 'MD15G1319600' => 'mdo', 'MD16G1116900' => 'mdo', 'MD17G1203200' => 'mdo', 'MD17G1203400' => 'mdo', 'MD17G1203500' => 'mdo', 'Medtr0045s0110' => 'mtr', 'Medtr1g011800' => 'mtr', 'Medtr2g019600' => 'mtr', 'Medtr2g103170' => 'mtr', 'Medtr4g039680' => 'mtr', 'Medtr4g039720' => 'mtr', 'Medtr4g039740' => 'mtr', 'MELO3C007138.2' => 'cme', 'MELO3C011233.2' => 'cme', 'MELO3C014881.2' => 'cme', 'MELO3C023133.2' => 'cme', 'MELO3C023987.2' => 'cme', 'Migut.A00310' => 'egut', 'Migut.D01048' => 'egut', 'Migut.H01365' => 'egut', 'Migut.I00808' => 'egut', 'Migut.K00087' => 'egut', 'Migut.K00720' => 'egut', 'Migut.K00722' => 'egut', 'Migut.K00723' => 'egut', 'Migut.K00725' => 'egut', 'Migut.K00726' => 'egut', 'Migut.M00915' => 'egut', 'Migut.N01782' => 'egut', 'Migut.O00525' => 'egut', 'MSTRG.10817' => 'ama', 'MSTRG.13251' => 'ama', 'MSTRG.13988' => 'ama', 'MSTRG.14772' => 'ama', 'MSTRG.25856' => 'ama', 'MSTRG.5034' => 'ama', 'Nitab4.5_0000151g0270' => 'nta', 'Nitab4.5_0000620g0120' => 'nta', 'Nitab4.5_0000671g0160' => 'nta', 'Nitab4.5_0000707g0280' => 'nta', 'Nitab4.5_0000733g0040' => 'nta', 'Nitab4.5_0002275g0110' => 'nta', 'Nitab4.5_0002308g0020' => 'nta', 'Nitab4.5_0003011g0080' => 'nta', 'Nitab4.5_0003512g0020' => 'nta', 'Nitab4.5_0005611g0020' => 'nta', 'Nitab4.5_0005981g0010' => 'nta', 'Nitab4.5_0006854g0020' => 'nta', 'Nitab4.5_0008200g0010' => 'nta', 'Nitab4.5_0009607g0010' => 'nta', 'Nn1g06713' => 'nnu', 'Nn1g09241' => 'nnu', 'Nn2g11186' => 'nnu', 'Nn2g11932' => 'nnu', 'Nn2g14392' => 'nnu', 'Nn2g15266' => 'nnu', 'Nn2g15267' => 'nnu', 'Nn3g16477' => 'nnu', 'Nn3g18262' => 'nnu', 'Nn3g20756' => 'nnu', 'Nn4g22344' => 'nnu', 'Nn4g22345' => 'nnu', 'Nn4g25855' => 'nnu', 'Nn4g25884' => 'nnu', 'Nn4g26548' => 'nnu', 'Nn5g30415' => 'nnu', 'Nn6g34280' => 'nnu', 'Nn7g36260' => 'nnu', 'Nn7g36261' => 'nnu', 'Nn8g39363' => 'nnu', 'Nn8g40619' => 'nnu', 'Nn8g40620' => 'nnu', 'Oeu000826.1' => 'oeu', 'Oeu015232.1' => 'oeu', 'Oeu030079.1' => 'oeu', 'Oeu030202.1' => 'oeu', 'Oeu031577.1' => 'oeu', 'Oeu033465.1' => 'oeu', 'Oeu033954.1' => 'oeu', 'Oeu037587.1' => 'oeu', 'Oeu042444.1' => 'oeu', 'Oeu047579.1' => 'oeu', 'Oeu047596.1' => 'oeu', 'Oeu047598.1' => 'oeu', 'Oeu049491.1' => 'oeu', 'Oeu052300.1' => 'oeu', 'Oeu052378.1' => 'oeu', 'Os01g0531400' => 'osa', 'Os01g0611000' => 'osa', 'Os01g0756600' => 'osa', 'Os02g0205200' => 'osa', 'Os02g0527500' => 'osa', 'Os03g0328501' => 'osa', 'Os03g0807700' => 'osa', 'Os04g0494600' => 'osa', 'Os04g0494800' => 'osa', 'Os04g0494900' => 'osa', 'Os04g0494950' => 'osa', 'Os04g0495000' => 'osa', 'Os07g0132600' => 'osa', 'Os07g0206900' => 'osa', 'Peaxi162Scf00015g00460' => 'pax', 'Peaxi162Scf00019g00012' => 'pax', 'Peaxi162Scf00034g00123' => 'pax', 'Peaxi162Scf00040g00096' => 'pax', 'Peaxi162Scf00207g00747' => 'pax', 'Peaxi162Scf00341g00823' => 'pax', 'Peaxi162Scf00493g00120' => 'pax', 'Peaxi162Scf00585g00082' => 'pax', 'Peaxi162Scf00595g00415' => 'pax', 'Peaxi162Scf00695g00022' => 'pax', 'Peaxi162Scf01211g00132' => 'pax', 'PGR004G2769' => 'pgr', 'PGR031G1548' => 'pgr', 'PGR031G2503' => 'pgr', 'PGR042G2081' => 'pgr', 'PGR044G1114' => 'pgr', 'PGR102G0033' => 'pgr', 'PGR142G4139' => 'pgr', 'PGSC0003DMG400005694' => 'stu', 'PGSC0003DMG400006856' => 'stu', 'PGSC0003DMG400021161' => 'stu', 'PGSC0003DMG400028517' => 'stu', 'PGSC0003DMG400028619' => 'stu', 'PGSC0003DMG400029086' => 'stu', 'PGSC0003DMG400032084' => 'stu', 'Phvul.001G053100' => 'pvu', 'Phvul.005G024100' => 'pvu', 'Phvul.005G174500' => 'pvu', 'Phvul.006G164100' => 'pvu', 'Phvul.011G012600' => 'pvu', 'Potri.001G174400' => 'ptr', 'Potri.001G263900' => 'ptr', 'Potri.003G059800' => 'ptr', 'Potri.006G050300' => 'ptr', 'Potri.006G050400' => 'ptr', 'Potri.006G250100' => 'ptr', 'Potri.009G058800' => 'ptr', 'Potri.011G087500' => 'ptr', 'Potri.016G056100' => 'ptr', 'Potri.018G031100' => 'ptr', 'Prupe.1G472800' => 'ppe', 'Prupe.2G017800' => 'ppe', 'Prupe.3G078400' => 'ppe', 'Prupe.4G079800' => 'ppe', 'Prupe.7G061700' => 'ppe', 'Psat0s3200g0040' => 'psa', 'Psat1g190720' => 'psa', 'Psat5g210000' => 'psa', 'Psat5g300680' => 'psa', 'Psat6g029720' => 'psa', 'Psat6g085040' => 'psa', 'PSO017G0561' => 'pso', 'PSO017G1337' => 'pso', 'PSO063G1060' => 'pso', 'PSO063G7195' => 'pso', 'PSO151G0121' => 'pso', 'PSO170G1070' => 'pso', 'PSO170G1436' => 'pso', 'PSO170G3781' => 'pso', 'PSO170G4772' => 'pso', 'PSO170G6168' => 'pso', 'PSO170G6316' => 'pso', 'PSO170G6716' => 'pso', 'PSO339G1714' => 'pso', 'PSO339G2420' => 'pso', 'PSO339G5540' => 'pso', 'PSO339G5585' => 'pso', 'PSO384G0926' => 'pso', 'PSO455G0020' => 'pso', 'PSO455G0047' => 'pso', 'PSO455G0157' => 'pso', 'PSO455G0176' => 'pso', 'PSO455G0220' => 'pso', 'PSO455G0231' => 'pso', 'PSO455G0254' => 'pso', 'PSO478G3395' => 'pso', 'PSO541G1175' => 'pso', 'PSO541G2174' => 'pso', 'PSO541G4198' => 'pso', 'PSO675G0577' => 'pso', 'PSO675G0912' => 'pso', 'PSO675G8514' => 'pso', 'PSO724G0837' => 'pso', 'PSO782G0671' => 'pso', 'QL02p023129' => 'qlo', 'QL04p008815' => 'qlo', 'QL05p027448' => 'qlo', 'QL05p058432' => 'qlo', 'QL05p058459' => 'qlo', 'QL07p000208' => 'qlo', 'RcHm_v2.0_Chr1g0317061' => 'rch', 'RcHm_v2.0_Chr2g0136831' => 'rch', 'RcHm_v2.0_Chr2g0136841' => 'rch', 'RcHm_v2.0_Chr3g0482101' => 'rch', 'RcHm_v2.0_Chr5g0013971' => 'rch', 'RcHm_v2.0_Chr6g0298661' => 'rch', 'Rhsim01G0127200' => 'rsi', 'Rhsim01G0128200' => 'rsi', 'Rhsim02G0194200' => 'rsi', 'Rhsim04G0102400' => 'rsi', 'Rhsim09G0159400' => 'rsi', 'Rhsim12G0194600' => 'rsi', 'Sabra01G0137600' => 'sbr', 'Sabra06G0035200' => 'sbr', 'Sabra06G0035300' => 'sbr', 'Sabra06G0195700' => 'sbr', 'Sabra09G0043100' => 'sbr', 'Sabra11G0069500' => 'sbr', 'Sabra16G0058600' => 'sbr', 'Sabra16G0162100' => 'sbr', 'Sabra18G0032400' => 'sbr', 'SalBow1G5974' => 'sbo', 'SalBow2G0114' => 'sbo', 'SalBow2G0927' => 'sbo', 'SalBow2G1864' => 'sbo', 'SalBow4G0101' => 'sbo', 'SalBow4G1758' => 'sbo', 'SalBow5G2562' => 'sbo', 'SalBow6G4973' => 'sbo', 'SalBow7G1051' => 'sbo', 'Sc10g0000190' => 'sci', 'Sc10g0005570' => 'sci', 'Sc12g0008900' => 'sci', 'Sc17g0004950' => 'sci', 'Sc19g0006540' => 'sci', 'Sc23g0006920' => 'sci', 'Sed0000629' => 'sed', 'Sed0003602' => 'sed', 'Sed0006303' => 'sed', 'Sed0007307' => 'sed', 'Sed0011370' => 'sed', 'Sed0014714' => 'sed', 'Sed0015259' => 'sed', 'Sed0022255' => 'sed', 'Sed0027658' => 'sed', 'SEGI_01769' => 'sgi', 'SEGI_03202' => 'sgi', 'SEGI_03709' => 'sgi', 'SEGI_06577' => 'sgi', 'SEGI_06996' => 'sgi', 'SEGI_07128' => 'sgi', 'SEGI_08746' => 'sgi', 'SEGI_15362' => 'sgi', 'SEGI_15886' => 'sgi', 'SEGI_18989' => 'sgi', 'SEGI_20728' => 'sgi', 'SEGI_22769' => 'sgi', 'SEGI_26466' => 'sgi', 'SEGI_31731' => 'sgi', 'SEGI_33716' => 'sgi', 'SEGI_34224' => 'sgi', 'SEGI_37870' => 'sgi', 'SGA_v2.0_scaffold106G30646' => 'sas', 'SGA_v2.0_scaffold161G37803' => 'sas', 'SGA_v2.0_scaffold16G07623' => 'sas', 'SGA_v2.0_scaffold18G08284' => 'sas', 'SGA_v2.0_scaffold22G09934' => 'sas', 'SGA_v2.0_scaffold253G45200' => 'sas', 'SGA_v2.0_scaffold5G02650' => 'sas', 'SGA_v2.0_scaffold94G28483' => 'sas', 'SGA_v2.0_scaffold9G04718' => 'sas', 'SHI24868' => 'shi', 'Solyc01g087540.4' => 'sly', 'Solyc02g070540.3' => 'sly', 'Solyc03g120040.3' => 'sly', 'Solyc04g015610.3' => 'sly', 'Solyc04g015620.3' => 'sly', 'Solyc06g067910.3' => 'sly', 'Solyc08g067030.3' => 'sly', 'Solyc12g042930.2' => 'sly', 'Sopen01g034510' => 'spe', 'Sopen02g019630' => 'spe', 'Sopen03g038920' => 'spe', 'Sopen04g007690' => 'spe', 'Sopen04g007700' => 'spe', 'Sopen06g025190' => 'spe', 'Sopen08g020980' => 'spe', 'Sopen11g027870' => 'spe', 'Sopen12g022110' => 'spe', 'Sp1g25860' => 'spa', 'Sp2g22070' => 'spa', 'Sp3g06940' => 'spa', 'Sp4g16770' => 'spa', 'Sp4g24060' => 'spa', 'Sp4g24070' => 'spa', 'Sp5g35570' => 'spa', 'Sp6g32180' => 'spa', 'Sp7g30250' => 'spa', 'TAR369G0779' => 'tar', 'TAR383G0624' => 'tar', 'TAR623G1678' => 'tar', 'TAR623G1785' => 'tar', 'TAR625G0299' => 'tar', 'TAR629G1290' => 'tar', 'THA.LOC104799224' => 'tha', 'THA.LOC104803829' => 'tha', 'THA.LOC104809851' => 'tha', 'THA.LOC104813570' => 'tha', 'THA.LOC104814294' => 'tha', 'THA.LOC104815031' => 'tha', 'THA.LOC104815148' => 'tha', 'THA.LOC104818346' => 'tha', 'THA.LOC104820646' => 'tha', 'THA.LOC104824444' => 'tha', 'THA.LOC109115987' => 'tha', 'Thecc.01G408300' => 'tca', 'Thecc.04G035500' => 'tca', 'Thecc.05G156500' => 'tca', 'Thecc.06G074900' => 'tca', 'Thecc.06G151600' => 'tca', 'Thecc.09G148800' => 'tca', 'Thhalv10004442m.g' => 'esa', 'Thhalv10007784m.g' => 'esa', 'Thhalv10013887m.g' => 'esa', 'Thhalv10016026m.g' => 'esa', 'Thhalv10016749m.g' => 'esa', 'Thhalv10016810m.g' => 'esa', 'Thhalv10016825m.g' => 'esa', 'Thhalv10017674m.g' => 'esa', 'Thhalv10018730m.g' => 'esa', 'Thhalv10020990m.g' => 'esa', 'Thhalv10025706m.g' => 'esa', 'TPR.G15659' => 'tpr', 'TPR.G27844' => 'tpr', 'TPR.G28609' => 'tpr', 'TPR.G30169' => 'tpr', 'TPR.G37154' => 'tpr', 'TPR.G39524' => 'tpr', 'TPR.G900' => 'tpr', 'TWI09G1180' => 'twi', 'TWI32G0227' => 'twi', 'TWI34G0092' => 'twi', 'TWI73G0555' => 'twi', 'TWI74G1003' => 'twi', 'TWI75G0342' => 'twi', 'unitig_0.g2815' => 'ugi', 'unitig_0.g930' => 'ugi', 'unitig_61.g26079' => 'ugi', 'unitig_747.g21888' => 'ugi', 'unitig_747.g22048' => 'ugi', 'vmacro03964' => 'vma', 'vmacro09076' => 'vma', 'vmacro16927' => 'vma', 'vmacro21193' => 'vma', 'VMungo0540G0940' => 'vmu', 'VMungo0647G0419' => 'vmu', 'VMungo0647G1006' => 'vmu', 'VMungo1080G1737' => 'vmu', 'VMungo1127G0956' => 'vmu', 'VMungo1309G0108' => 'vmu', 'Zm00001eb061750' => 'zma', 'Zm00001eb078660' => 'zma', 'Zm00001eb078670' => 'zma', 'Zm00001eb078680' => 'zma', 'Zm00001eb078690' => 'zma', 'Zm00001eb078700' => 'zma', 'Zm00001eb078710' => 'zma', 'Zm00001eb152750' => 'zma', 'Zm00001eb161870' => 'zma', 'Zm00001eb235330' => 'zma', 'Zm00001eb370700' => 'zma', 'Zm00001eb425620' => 'zma' ) $gf_id = 'HOM05D000636' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000636' ) $data_identifier = 'HOM05D000636' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 10, 'atr' => (int) 7, 'acertr' => (int) 6, 'cqu' => (int) 17, 'bca' => (int) 34, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 13, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 9, 'bvu' => (int) 8, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 6, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 7, 'lonja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 10, 'mbi' => (int) 8, 'mdo' => (int) 14, 'mtr' => (int) 7, 'cme' => (int) 5, 'egut' => (int) 13, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 22, 'oeu' => (int) 15, 'osa' => (int) 14, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 33, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 17, 'sas' => (int) 9, 'shi' => (int) 1, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 6, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 11, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425620' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1